miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|158914423|gb|EX886942.1|EX886942 GCCAATGCAAAGGGTTATTACTCTAGGCACAGAGTGTGTGGAGTGCACTCTAAAACACCCAAAGTCATTGTCGCTGGTAT
CGAACAAAGGTTCTGTCAACAGTGCAGCAGGTTTCATCAGCTTCCGGAATTTGACCTAGAGAAAAGGAGTTGCCGTAGGA
GACTCGCTGGTCATAATGAGAGACGGAGGAAGCCACAGCCTGCGTCTCTCTCTGTGTTGTCTTCTCGTTACGGGAGGATA
GCACCTTCGCTTTACGGAAATGCTGAAACTACAATGAATGGGAGCTTTCTTGGTTCCCAAGAAATGGGTTGGACAAATAC
AAGAACGTTGGATGCAAGAGTGATGAGACGACCGTCGTGGCAGATCAATCCGATGAACGTGTTTAGTCAAGGATCAGTCA
GTGGAGGAGGAGGAGGAGGGATAAGCTTCTCATCTCCAGAGGTTATGGACACTAAACCAGAGAGCTACAAGGGGATTGGC
AGCGACTCAAACTGTGCTCTCTCTCTTCTGTCAAACCCACACCAGCCACATGACAACACCAACGACAACAACACATGGAG
AACTTCTTCAGGTTTTGGTCCGATGACGGTTACAATGGCTCAGCCACCACCTGCACCTAGCCAGCATCAGTATCTGAACC
CGCCTTGGGTGTTTAAGGACGATGACAATAACTGTCAGAATGATATGTCTCCTGTTTTGAATTTGGGGCGATTCACCGAG
ACAGAGATGGGCGGTGGAACGACAATGGGTGAGTTCGAGTTATCTGACCATCAACATCAGAA




Most similar to sp|Q700W2|SPL9_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9
           OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2
          Length = 375

 Score =  388 bits (996), Expect = e-107
 Identities = 201/274 (73%), Positives = 210/274 (76%), Gaps = 15/274 (5%)
 Frame = +1

Query: 4   NAKGYYSRHRVCGVHSKTPKVIVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNER 183
           NAKGYYSRHRVCGVHSKTPKV VAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNER
Sbjct: 85  NAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNER 144

Query: 184 RRKPQPASLSVLSSRYGRIAPSLYGNAETTMNGSFLGSQEMGWTNTRTLDARVMRR---- 351
           RRKPQPASLSVL+SRYGRIAPSLY N +  MNGSFLG+QE+GW ++RTLD RVMRR    
Sbjct: 145 RRKPQPASLSVLASRYGRIAPSLYENGDAGMNGSFLGNQEIGWPSSRTLDTRVMRRPVSS 204

Query: 352 PSWQINPMNVFXXXXXXXXXXXXXXXXXPEVMDTKPESYKGIGSDSNCALSLLSNPHQPH 531
           PSWQINPMNVF                 PE+MDTK ESYKGIG DSNCALSLLSNPHQPH
Sbjct: 205 PSWQINPMNVF---SQGSVGGGGTSFSSPEIMDTKLESYKGIG-DSNCALSLLSNPHQPH 260

Query: 532 D--------NTNDNNTWRTSSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKDDDNNCQNDM 687
           D        N N+NNTWR SSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKD+D    NDM
Sbjct: 261 DNNNNNNNNNNNNNNTWRASSGFGPMTVTMAQPPPAPSQHQYLNPPWVFKDND----NDM 316

Query: 688 SPVLNLGR---XXXXXXXXXXXXXXXXLSDHQHQ 780
           SPVLNLGR                   LSDH HQ
Sbjct: 317 SPVLNLGRYTEPDNCQISSGTAMGEFELSDHHHQ 350